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This paper1 proposed a method for high-resolution images inpainting with large missing areas. The authors suggested the challenge of the task is the lack of large receptive fields of conventional convolution neural networks. Three contributions were claimed but I find the fast Fourier Convolutions (FFC)2 to be the most essential component, which...

The presence of lymph node metastases is one of the most important factors in breast cancer prognosis. The most common strategy to assess the regional lymph node status is the sentinel lymph node procedure. The sentinel lymph node is the most likely lymph node to contain metastasized cancer cells and is excised, histopathologically processed and...

Installation See more details at https://pypi.org/project/openslide-python/ Install OpenSlide. pip install openslide-python Quick installation on Ubuntu apt-get install openslide-tools apt-get install python3-openslide Tutorial OpenSlide1 is a library that provides a simple interface for reading whole-slide images, also known as vir...

The h5py package is a Pythonic interface to the HDF5 binary data format.1 An HDF5 file is a container for two kinds of objects: groups and datasets. Groups work like dictionaries, and datasets work like NumPy arrays. h5py Documentation ↩

The National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis, or proteogenomics. Data (genomics, proteomics, imaging), assays, and reagents are made available to the pub...

Markdown is a useful tool to write documents and blog posts (like this one that I’m writing). Markdown syntax is easy to learn. Here I’d introduce the Markdown syntax that will meet 99% of your daily need.

Why Docker?(Or why not Anaconda?) Before starting with Docker, you should know there are some other options to build your machine learning (ML) developing environment such as Anaconda or pyenv. Anaconda is a better choice if you‘re totally new to ML because it’s easier to start with. However, there are some problems bothered me that drove me to...

Install TeXLive in WSL2 Check out the official quick installation instructions.